Did you include the back slashes in your command? If so, remove them and
retry.
On 9/25/15 7:11 PM, Dusan Hirjak wrote:
Dear Freesurfer experts,
I am trying to compare 3 groups (aut, sch, ges) according to
thickness, area and LGI at once (omnibus test).
I did run the following command:
mris_preproc --fsgd NSS_3_GR.fsgd \ --cache-in
thickness.fwhm15.fsaverage \ --target fsaverage --hemi lh \ --out
lh.NSS_3_GR.thickness.15.mgh
This step did work properly:-)
Now, Im trying to run the following command, but it does not work:
mri_glmfit \ --y lh.NSS_3_GR.thickness.15.mgh \ --fsgd NSS_3_GR.fsgd
dods\ --C contrasts.mtx \ --surf fsaverage lh \ --cortex \ --glmdir
NSS_3_GR.glmdir
I got this message: "ERROR: Option--y unknown"
What am I doing wrong?
Thank you for your help!
Best regards
Dusan
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