Hi Tara, Try in your home directory as well (i.e. where you land where you put only cd on the command line), sometimes if it doesn't work from the qdec directory this will do it. And then open a new terminal and start qdec.
Keep me posted! Marie On Sep 17, 2015, at 4:26 PM, Tara Miskovich <misko...@uwm.edu<mailto:misko...@uwm.edu>> wrote: Thank you for the response Marie. By home directory do you mean the freesurfer home directory? Currently, I have it in the qdec directory as stated in the wiki and it appears to be correct. Thanks again, Tara On Thu, Sep 17, 2015 at 6:09 PM, Marie Schaer <marie.sch...@unige.ch<mailto:marie.sch...@unige.ch>> wrote: Tara, After copying the .Qdecrc, did you check that the .Qdecrc file is in your home directory and that MEASURE1 = pial_lgi is listed there? When this is fine, start with a new terminal and pial_lgi should be in the option among other measures. Let me know, Marie On Sep 17, 2015, at 4:02 PM, Tara Miskovich <misko...@uwm.edu<mailto:misko...@uwm.edu>> wrote: Hi all, I just transferred data from a drive to do some LGI analyses, and all the data has already been processed and cached, so I have all the results sample to the fsaverage at various levels of smoothing for each subject. Additionally, I added the .Qdecrc file so pial_lgi would pop up as an option, but that did not seem to work. Does anyone know what might be going on, and how I can get that option to pop up in qdec? -- Thank you, Tara _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Thank you, Tara A. Miskovich, M.S. Affective Neuroscience Laboratory Department of Psychology University of Wisconsin-Milwaukee 334 Garland Hall misko...@uwm.edu<mailto:misko...@uwm.edu> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
