This error means that the number of volumes in your diffusion data set
doesn't match the number of lines in the bvecs/bvals files.
You can run "mri_info dmri/dwi.nii.gz" to see the number of volumes in
your data set.
On Wed, 9 Sep 2015, andrea cristina Lima wrote:
Dear Anastasia, I checked the files with the command "more" and were ok. But
did not run. I am worried, because I tried many things and still having the
same problem:
data and bvals/bvecs do not contain the same number of entries
Attached is the log file. I think could be the format of the text file. What
would be the correct format? Unicode-8, Unicode-16, etc.
Thank you very much!
2015-09-08 11:37 GMT-03:00 Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu>:
I need to see the log file. Based on the output files that you
sent me, it ran further along this time, so you must be running
into a different error now. I can't guess what the problem is
without seeing the log.
On Mon, 7 Sep 2015, andrea cristina Lima wrote:
---------- Forwarded message ----------
From: andrea cristina Lima <andrealima....@gmail.com>
Date: 2015-09-04 19:31 GMT-03:00
Subject: Re: [Freesurfer] Problem running Tracula
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu>
Dear Anastasia, thank you!
I've done what you suggested and saved in text files. But,
even that did not work!
Could you please see my files again? I checked with the
command "more bvecs" and
was ok. I really need to solve this problem urgently. I am
also sending the dmri
folder.
Thank you very much!
2015-09-04 18:04 GMT-03:00 Anastasia Yendiki
<ayend...@nmr.mgh.harvard.edu>:
Hi Andrea - Make sure that the b-value table and
gradient table are
saved as plain text files. When you run the "more"
command on them,
you should see all the numbers and only numbers.
This is what I get when I run more on your files
(this may vary
depending on the flavor of unix you have on your
computer):
% more bvals.txt
0^M1000^M1000^M1000^M1000^M1000^M1000^M1000^M1000^M1000^M1000^M1000^M1000^M
1000
^M1000^M1000^M1000^M1000^M1000^M1000^M1000^M1000^M1000^M1000^M1000^M1000^M1
000^M^
M1000^M1000^M1000^M1000^M1000^M1000
% more bvecs.txt
"bvecs.txt" may be a binary file. See it anyway?
??0^@ ^@0^@ ^@0^@^M^@
^@-^@1^@ ^@0^@ ^@0^@^M^@
^@0^@ ^@-^@1^@ ^@0^@^M^@
^@0^@ ^@0^@ ^@1^@^M^@
^@0^@.^@0^@4^@2^@ ^@0^@.^@1^@1^@5^@
^@-^@0^@.^@9^@9^@3^@^M^@
^@-^@0^@.^@1^@7^@5^@ ^@0^@.^@2^@
^@-^@0^@.^@9^@6^@4^@^M^@
^@-^@0^@.^@2^@3^@2^@ ^@0^@.^@1^@6^@3^@
^@-^@0^@.^@9^@5^@9^@^M^@
^@-^@0^@.^@3^@6^@8^@ ^@-^@0^@.^@0^@2^@6^@
^@-^@0^@.^@9^@3^@^M^@
^@-^@0^@.^@1^@9^@ ^@-^@0^@.^@3^@7^@4^@
^@-^@0^@.^@9^@0^@8^@^M^@
^@0^@.^@1^@1^@7^@ ^@-^@0^@.^@8^@3^@3^@
^@-^@0^@.^@5^@4^@^M^@
^@0^@.^@2^@ ^@-^@0^@.^@2^@5^@3^@
^@-^@0^@.^@9^@4^@7^@^M^@
^@0^@.^@4^@9^@6^@ ^@-^@0^@.^@1^@3^@4^@
^@-^@0^@.^@8^@5^@8^@^M^@
^@0^@.^@0^@1^@4^@ ^@0^@.^@6^@2^@8^@
^@-^@0^@.^@7^@7^@8^@^M^@
^@0^@.^@7^@4^@4^@ ^@0^@.^@1^@4^@8^@
^@-^@0^@.^@6^@5^@1^@^M^@
^@0^@.^@7^@6^@1^@ ^@-^@0^@.^@3^@2^@
^@-^@0^@.^@5^@6^@4^@^M^@
^@0^@.^@1^@8^@1^@ ^@-^@0^@.^@9^@2^@5^@
^@-^@0^@.^@3^@3^@5^@^M^@
^@0^@.^@6^@8^@ ^@0^@.^@4^@2^@2^@ ^@-^@0^@.^@6^@^M^@
^@-^@0^@.^@7^@7^@7^@ ^@-^@0^@.^@4^@7^@1^@
^@-^@0^@.^@4^@1^@8^@^M^@
^@-^@0^@.^@9^@2^@4^@ ^@0^@.^@1^@0^@4^@
^@-^@0^@.^@3^@6^@8^@^M^@
^@-^@0^@.^@4^@6^@8^@ ^@0^@.^@7^@6^@7^@
^@-^@0^@.^@4^@3^@8^@^M^@
^@-^@0^@.^@8^@8^@2^@ ^@0^@.^@1^@8^@9^@
^@-^@0^@.^@4^@3^@2^@^M^@
^@-^@0^@.^@6^@9^@ ^@-^@0^@.^@7^@0^@6^@
^@-^@0^@.^@1^@5^@7^@^M^@
^@-^@0^@.^@2^@3^@9^@ ^@-^@0^@.^@7^@5^@7^@
^@-^@0^@.^@6^@0^@8^@^M^@
^@0^@.^@0^@5^@8^@ ^@-^@0^@.^@9^@8^@4^@
^@0^@.^@1^@7^@^M^@
^@0^@.^@5^@3^@7^@ ^@-^@0^@.^@8^@3^@6^@
^@-^@0^@.^@1^@1^@3^@^M^@
^@0^@.^@9^@9^@2^@ ^@0^@.^@1^@2^@1^@
^@-^@0^@.^@0^@4^@2^@^M^@
^@0^@.^@9^@9^@7^@ ^@-^@0^@.^@0^@7^@1^@
^@-^@0^@.^@0^@3^@8^@^M^@
^@0^@.^@8^@7^@2^@ ^@-^@0^@.^@4^@7^@8^@
^@-^@0^@.^@1^@0^@1^@^M^@
^@0^@.^@2^@4^@9^@ ^@-^@0^@.^@9^@3^@3^@
^@0^@.^@2^@5^@8^@^M^@
^@-^@0^@.^@1^@1^@8^@ ^@-^@0^@.^@9^@9^@2^@
^@-^@0^@.^@0^@4^@7^@^M^@
^@-^@0^@.^@3^@3^@8^@ ^@-^@0^@.^@8^@4^@1^@
^@0^@.^@4^@2^@2^@^M^@
^@-^@0^@.^@5^@2^@9^@ ^@-^@0^@.^@8^@4^@1^@
^@0^@.^@1^@1^@6^@^M^@
^@-^@0^@.^@9^@9^@7^@ ^@-^@0^@.^@0^@5^@5^@
^@-^@0^@.^@0^@5^@7^@
On Fri, 4 Sep 2015, andrea cristina Lima wrote:
Please I am having the problem:
bvecs and bvals don't have the same number of
entries
I tried to use the bvecs and bvals files as
suggested in
the Tutorial, but doesn't
work. Please see the files attached (log,
files and
script). Thank you very much
--
Andrea Cristina de Lima
PardiniCV: http://lattes.cnpq.br/0921194840474573
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dispose of the e-mail.
--
Andrea Cristina de Lima
PardiniCV: http://lattes.cnpq.br/0921194840474573
--
Andrea Cristina de Lima
PardiniCV: http://lattes.cnpq.br/0921194840474573
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom
it is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you
in error
but does not contain patient information, please contact the sender
and properly
dispose of the e-mail.
--
Andrea Cristina de Lima PardiniCV: http://lattes.cnpq.br/0921194840474573
_______________________________________________
Freesurfer mailing list
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The information in this e-mail is intended only for the person to whom it is
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contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
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