p.s. you can try increasing the resolution of the intermediate volumes
using the -r switch. The default is 0.5. Try 0.25 (although this will
take 8 times the memory and time I think). Make sure to put the -r 0.25
before before the mandatory options. If this does make things look
significantly better please let us know
On Tue, 8 Sep 2015, Sebastien
Proulx wrote:
My images don’t seem to have come out. Here it is again in attachments
instead of inserts.
In csf.png, we see that the calcarine was not completely filled with CSF by
mri_compute_volume_fractions.
In gm.png, it is instead filled with gray matter.
In ribbon.png, we see that the standard freesurfer pipeline did correctly
assigned to same spot to non-gray matter, suggesting that the problem comes
from mri_compute_volume_fractions, and not from some failure of the surface
reconstruction.
Thanks a lot for your much needed help and
Have a very good day!
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