processing attempt on latest dev 8/15 did not resolve the subcortical annotation within WM tracks, the unknown voxels continue to persist.
On Aug 26, 2015, at 7:06 AM, Bruce Fischl wrote: > it would fix the hippocampal problems and maybe the cortical ones as well > > cheers > Bruce > On > Tue, 25 Aug 2015, fmri wrote: > >> I have already processed 88 subjects in this version, >> >> would it matter if I process or re-process subjects with another version? >> >> >> On Aug 25, 2015, at 3:44 PM, Bruce Fischl wrote: >> >>> that's probably the reason the hippocampus (and maybe cortex) doesn't >>> look that good. Try grabbing a new dev version and see if it improves. >>> Doug: has the new atlas been put into the dev recon-all? I think it has, >>> hasn't it? >>> >>> On Tue, 25 Aug 2015, fmri wrote: >>> >>>> Version >>>> >>>> freesurfer-Darwin-lion-dev-20150701 >>>> >>>> >>>> On Aug 25, 2015, at 3:11 PM, Bruce Fischl wrote: >>>> >>>>> Hi Joe >>>>> >>>>> what version are you using? That looks a lot like a bug I fixed a month >>>>> or two ago (the hippocampal stuff). The cortex I'm not so sure about. Some >>>>> of it might be dura >>>>> cheers >>>>> Bruce >>>>> >>>>> >>>>> On Tue, 25 Aug 2015, fmri wrote: >>>>> >>>>>> Dear Freesurfer experts, >>>>>> >>>>>> on aparc+aseg.mgz there is Hippocampus labeled over WM regions. >>>>>> >>>>>> There are cortex "Unknown" voxels that persist through out all of our >>>>>> scans. >>>>>> >>>>>> What files should be edited and what recons should be processed after >>>>>> edits to get a complete freesurfer data set. >>>>>> >>>>>> Thanks >>>>>> >>>>>> Joe >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>>> The information in this e-mail is intended only for the person to whom it >>>>> is >>>>> addressed. If you believe this e-mail was sent to you in error and the >>>>> e-mail >>>>> contains patient information, please contact the Partners Compliance >>>>> HelpLine at >>>>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>>>> error >>>>> but does not contain patient information, please contact the sender and >>>>> properly >>>>> dispose of the e-mail. >>>>> >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
