sorry, what is this in reference too? Please remember to include the text from previous exchanges so we have context for questions. We answer a lot of email on freesurfer@... and it is hard to keep track of things.

On 8/14/15 7:00 AM, Elijah Mak wrote:
Hi Douglas,

Thanks for the help! However, when I tried the --nofixmni flag, all the ROIs appeared to have identical MNI coordinates. I have pasted the output from 3 ROIS in the LH.

# ClusterNo  Max   VtxMax   Size(mm^2)  MNIX   MNIY   MNIZ   NVtxs

   1        3.332   83949 82219.39    -29.4  -22.0   17.4  163842
   1        3.533  117158 82219.39    -29.4  -22.0   17.4  163842
   1        3.170   83424 82219.39    -29.4  -22.0   17.4  163842


The same thing happens to the ROIs on the RH (XYZ: 29.8 29.8 18.0).

Best Wishes,
Elijah

--

Elijah Mak, Gates Scholar

PhD Candidate *|* Psychiatry

University of Cambridge

Trinity College, Cambridge, CB2 1TQ



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