Thanks Doug,I downloaded and rerun and changed the permissions but it still
says: /Applications/freesurfer/bin/mri_probedicom: Permission denied.Any
idea?Thanks,EIraqn
On Monday, August 10, 2015 6:18 PM, Douglas N Greve
<gr...@nmr.mgh.harvard.edu> wrote:
Hi Eiran, can you download the following two binaries and rerun? First
make a backup copy of the ones that are there. Then copy the two below
into $FREESURFER_HOME/bin (remove the .mac).
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_convert.mac
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_probedicom.mac
On 08/10/2015 08:31 AM, Eiran Vadim Harel wrote:
> Hello Freesurfers,
> I am using freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0.
> I tried unpacking mosaic functional dicoms taken with siemens prisma
> scanner using:
>
> dcmunpack -src
> /users/eiran/Desktop/BSMT/201_/Study20150415_184518_65000 -targ
> /Applications/freesurfer/BSMT_PROJECT/bsmt201 -run 11 bold nii f.nii
> -run 13 bold nii f.nii -run 14 bold nii f.nii -run 15 bold nii f.nii
> -run 16 bold nii f.nii -run 17 bold nii f.nii -run 18 bold nii f.nii
> -run 19 bold nii f.nii
>
> I get the following error message:
>
>
> WARNING: file
> /users/eiran/Desktop/BSMT/BSMT/201_JACOBY_TAMMY/Study20150415_184518_65000/20TA_Se11_fMRI_Open_Eyes/MR011001001.dcm
>
> does not contain a Siemens ASCII header
> has this file been anonymized?
> ERROR: cannot unpack mosiacs without ASCII header
>
> The files were not anonymized nor changed.
> Any ideas how to deal with it?
>
> Thanks,
> Eiran
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
