Hi Lee, Perfect, Thanks.
Saeed On Thu, Aug 6, 2015 at 5:15 PM, Lee Tirrell <ltirr...@nmr.mgh.harvard.edu> wrote: > Hi Saeed, > > You can run either of the following commands to overlay the ?h.sulc or > ?h.curv file: > > tksurfer subject hemisphere surface -snap <file name> -sulc > tksurfer subject hemisphere surface -snap <file name> -curv > > Best, > Lee > > > On Thu, 6 Aug 2015, Saeed Mahdizadeh Bakhshmand wrote: > > I used it as this:tksurfer subject hemisphere surface -snap <file name> >> -overlay <file name> >> And it adds a gray scale version of sulcus map to the plain gray, How can >> I activate colors? >> >> Thanks, >> Saeed >> >> On Thu, Aug 6, 2015 at 4:20 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >> load them as "curvature" files >> >> cheers >> Bruce >> >> On Thu, 6 Aug 2015, Saeed Mahdizadeh Bakhshmand wrote: >> >> And are they treated as label files (e.g. lh.aparc.annot ) in >> the label >> directory? And how they can be added to the tksurfer snapshot >> procedure? >> >> On Thu, Aug 6, 2015 at 4:04 PM, Bruce Fischl < >> fis...@nmr.mgh.harvard.edu> >> wrote: >> no, the scalar overlays are stored separately (e.g. >> lh.curv, >> lh.sulc, etc...) >> On Thu, 6 Aug 2015, Saeed Mahdizadeh Bakhshmand wrote: >> >> Hello, >> Is scalar overlay information embedded into >> surface >> file itself? When I open >> them in freeview they are loaded with color >> overlays >> (sulcus/gyrus), but >> when I load same models into 3D slicer or take a >> snapshot in tksurfer, they >> are plain gray. >> >> Thanks, >> Saeed >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the >> person to whom >> it is >> addressed. If you believe this e-mail was sent to you in >> error and the >> e-mail >> contains patient information, please contact the Partners >> Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was >> sent to you >> in error >> but does not contain patient information, please contact the >> sender >> and properly >> dispose of the e-mail. >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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