I don't have a way to do SMS stc in 5.3 (it is there for 6.0). You might not need it for 1.15s TR. How long are your stimuli?
On 06/29/2015 04:41 PM, Rodriguez-Thompson, Anais wrote: > Hi all, > > We are currently using SMS3 scans for our resting state data. In order to > preprocess this scan, we are using the preproc-sess command which includes > slice-time correction. Since SMS3 is a multi-slice sequence that is > interleaved, do we need to use a different slice-time correction specific to > this type of sequence? If so, how do we specify the order of each set of > slices? Alternatively, since the TR is so short (1.15), would it be better > to skip the slice-time correction altogether using -nostc? > > Thanks for your help! > > Anais > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
