Hmmmm. Im not really sure how to proceed because you should not have that file. What does your build-stamp.txt file contain? Twice I have tested by downloading the lion OSX version of freesurfer from this page:
https://surfer.nmr.mgh.harvard.edu/fswiki/Download and never was a file called "freeview.bin" part of the installation. Perhaps you could consider completely removing the current installation and re-install? making absolutely sure you are using freesurfer-Darwin-lion-stable-pub-v5.3.0.dmg Once that is complete you can update to the newst freeview. Download the following link (ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/freeview/lion/Freeview.zip), Double click it, and replace you $FREESURFER_HOME/Freeview file with the one in the zip file. -Zeke On 06/25/2015 01:39 PM, joseph veliz wrote: > Sorry that is an archive zip that i also downloaded > > The one installed is Freesurfer -Darwin -lion -stabel -pub-v5.3.0.dmg > > > > On Thu, Jun 25, 2015 at 10:36 AM, joseph veliz <josephveli...@gmail.com > <mailto:josephveli...@gmail.com>> wrote: > > Positive we downloaded Freesurfer -Darwin - lion -dev.tar.gz > > On Thu, Jun 25, 2015 at 9:04 AM, Z K <zkauf...@nmr.mgh.harvard.edu > <mailto:zkauf...@nmr.mgh.harvard.edu>> wrote: > > > > On 06/23/2015 04:52 PM, joseph veliz wrote: > > Hello, > > > > > > We are having issues installing Freeview on Macbook pro (2015) > > > > 2.2 GHz, 16GB DDR3, OSX 10.9.4, Integrated 1.5 GB intel iris pro > graphic > > processing. > > > > Installing lastest Freesurfer and Freeview downloads of Darwin lion > v5.3.0. > > > > After installing Freesurfer , license and environment setup, the > only > > freeview found is in the bin folder and is named freeview.bin > > This doenst make sense because the OSX distribution of > freesurfer does > not contain a "freeview.bin" file. Only the linux distribution > contains > that file. Are you sure you didn't download and install the > linux build > on your OSX machine? > > > -Zeke > > > > > > Commands to open freeview did not work. > > > > Then I placed the seperately downloaded Freeview.app in the > > /application/freesurfer directory, then the command freeview > responded. > > > > We don't know if we are putting the Freeview.app in the > correct directory? > > > > When opening freeview; > > > > Volumes are loading fine, but when a Surface is loaded the > program > > quits, giving error message. > > > > I am thinking the integrated graphics could be the issue > (uses computers > > RAM). Reading the freesurfer Requirments wiki, > > Graphics card: 3D graphics card with its own graphics memory & > > accelerated OpenGL drivers. Could this be the issue even > though the > > macbook has 16GB DDR3 to spare? > > > > Also I don't think I am placing the Freeview.app in the > correct directory? > > > > Both gui and script attempts fail loading Surfaces and return > error > > > > 2015-06-23 12:43:29.660 Freeview[1855:303] modalSession has > been exited > > prematurely - check for a reentrant call to endModalSession: > > dyld: lazy symbol binding failed: Symbol not found: > ___emutls_get_address > > Referenced from: > > > > /Applications/freesurfer/Freeview.app/Contents/MacOS/../Frameworks/libgomp.1.dylib > > Expected in: /usr/lib/libSystem.B.dylib > > > > dyld: Symbol not found: ___emutls_get_address > > Referenced from: > > > > /Applications/freesurfer/Freeview.app/Contents/MacOS/../Frameworks/libgomp.1.dylib > > Expected in: /usr/lib/libSystem.B.dylib > > > > [0]PETSC ERROR: > > > > ------------------------------------------------------------------------ > > [0]PETSC ERROR: Caught signal number 5 TRAP > > [0]PETSC ERROR: Try option -start_in_debugger or > -on_error_attach_debugger > > [0]PETSC ERROR: or see > > > > http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC > > ERROR: or try http://valgrind.org on linux or man libgmalloc > on Apple to > > find memory corruption errors > > [0]PETSC ERROR: configure using --with-debugging=yes, > recompile, link, > > and run > > [0]PETSC ERROR: to get more information on the crash. > > [0]PETSC ERROR: --------------------- Error Message > > ------------------------------------ > > [0]PETSC ERROR: Signal received! > > [0]PETSC ERROR: > > > > ------------------------------------------------------------------------ > > [0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 13, Thu May 15 > > 17:29:26 CDT 2008 HG revision: > 4466c6289a0922df26e20626fd4a0b4dd03c8124 > > [0]PETSC ERROR: See docs/changes/index.html for recent updates. > > [0]PETSC ERROR: See docs/faq.html for hints about trouble > shooting. > > [0]PETSC ERROR: See docs/index.html for manual pages. > > [0]PETSC ERROR: > > > > ------------------------------------------------------------------------ > > [0]PETSC ERROR: Unknown Name on a darwin12. named > > fmris-MacBook-Pro.local by Dopamine Tue Jun 23 12:40:59 2015 > > [0]PETSC ERROR: Libraries linked from > > > > /usr/pubsw/packages/petsc/2.3.3-p13-64b/src/petsc-2.3.3-p13/lib/darwin12.2.0-c-opt > > [0]PETSC ERROR: Configure run at Mon Dec 17 15:29:35 2012 > > [0]PETSC ERROR: Configure options --with-debugging=no > --with-cc=gcc > > --with-fc=0 --download-f-blas-lapack=0 --download-mpich=1 > --with-mpi=1 > > --with-x=0 --with-gnu-copyright-code=0 --with-shared=0 > COPTFLAGS=-O3 > > CXXOPTFLAGS=-O3 FOPTFLAGS=-O3 > > [0]PETSC ERROR: > > > > ------------------------------------------------------------------------ > > [0]PETSC ERROR: User provided function() line 0 in unknown > directory > > unknown file > > [unset]: aborting job: > > application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 > > > > > > > > Any help or comments are much appreciated > > > > Thank you so much, > > > > Jospeh Veliz > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person > to whom it is > addressed. If you believe this e-mail was sent to you in error > and the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent > to you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
