Hi Bruce, Not the same Michael but I see this all the time with 5.3.
Interestingly, transforming annotations using mri_surf2surf does not run into the issue — perhaps that is what you're thinking of? Best, Michael On Tue, Jun 23, 2015 at 8:20 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Michael > > what version are you using? I thought this was fixed long ago > > cheers > Bruce > > On Tue, 16 Jun 2015, Michael Kranz wrote: > > Hi guys, >> I have created a custom surface label in the fsaverage template. I then >> used >> mri_label2label to map onto an individual subject. Despite the fsaverage >> label looking ok, the label mapped onto the individual subject is not as >> the >> label is "spotty" and has "holes." On the free surfer archive it seems >> that >> some people have had this problem and described it as "eroded" or >> "islands"(see >> https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg15125.h >> tml), but it wasn't clear to me that this issue has been solved. >> >> The above link recommended using one of the predefined labels to see if >> the >> problem persisted. I used rh.BA45.label and there was were no problems. >> >> I also used mri_surfcluster (as was done in the above link) to make my >> label. Below is the 1.) command 2.) the fsaverage label in tksurfer 3.) a >> pic of the same label mapped onto a subject in tksurfer >> >> Do you have an idea of what the issue is? Let me know if you need more >> info! >> >> mri_label2label \ >> --srcsubject fsaverage \ >> --srclabel ${srclabelpwd}/${rhROI} \ >> --trgsubject $subbase \ >> --trglabel ${SUBJECTS_DIR}/${subbase}/label/${rhROI} \ >> --hemi rh \ >> --regmethod surface >> >> >> Inline image 1 >> >> Inline image 2 >> >> >> >> >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
