Thanks, Zeke. If you have to remake it, it would be great if the executables were static. But in any case I'll give it a try. -- Thanks.
Regards, Don Don Krieger, Ph.D. Department of Neurological Surgery University of Pittsburgh (412)648-9654 Office (412)521-4431 Cell/Text > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer- > boun...@nmr.mgh.harvard.edu] On Behalf Of Z K > Sent: Sunday, May 24, 2015 5:48 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] freesurfer-Linux-centos7_x86_64-dev-20150521 on > ubuntu 14.04 crash with Illegal instruction (core dumped) > > I will make it available to you and send you a link on Tuesday. > > -Zeke > > > > On May 23, 2015, at 10:48 AM, Krieger, Donald N. <krieg...@upmc.edu> > wrote: > > > > Hi Zeke, > > > > I would like to try that version on comet to see if I get a significant > > speed-up. > > Can you provide an address and pathname from which I can use wget to grab > it? > > I'll report back with results compared with the standard release. > > Thanks, > > > > Don > > > > Don Krieger, Ph.D. > > Department of Neurological Surgery > > University of Pittsburgh > > > > ________________________________________ > > From: freesurfer-boun...@nmr.mgh.harvard.edu > > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Z K > > [zkauf...@nmr.mgh.harvard.edu] > > Sent: Friday, May 22, 2015 12:06 PM > > To: Freesurfer support list > > Subject: Re: [Freesurfer] freesurfer-Linux-centos7_x86_64-dev-20150521 > > on ubuntu 14.04 crash with Illegal instruction (core dumped) > > > > That particular developmental build is compiled with optimization > > flags for machines containing Intels new Haswell processor and wont > > run on platforms without it. Although that build is available via our > > dev download page, it remains an unsupported build that exists > > primarily for internal experimental purposes only. > > > > -Zeke > > > >> On 05/22/2015 11:49 AM, Knut J Bjuland wrote: > >> Hi > >> > >> I have tired the freesurfer-Linux-centos7_x86_64-dev-20150521. When I > >> start mri_convert on ubuntu 14.04.4 I get this results. > >> > >> knutjb@dmed4960:/usr/local/freesurfer60$ export FREESURFER_HOME= > >> /usr/local/freesurfer60 > >> knutjb@dmed4960:/usr/local/freesurfer60$ source > >> /usr/local/freesurfer60/SetUpFreeSurfer.sh > >> -------- freesurfer-Linux-centos7_x86_64-dev-20150521 -------- > >> Setting up environment for FreeSurfer/FS-FAST (and FSL) > >> FREESURFER_HOME /usr/local/freesurfer60 > >> FSFAST_HOME /usr/local/freesurfer/fsfast > >> FSF_OUTPUT_FORMAT nii.gz > >> SUBJECTS_DIR /home/knutjb/subjects > >> MNI_DIR /usr/local/freesurfer/mni > >> FSL_DIR /usr/share/fsl/5.0 > >> knutjb@dmed4960:/usr/local/freesurfer60$ mri_con > >> mri_concat mri_concatenate_lta mri_convert_crash > >> mri_concatenate_gcam mri_convert mri_convert_mdh > >> knutjb@dmed4960:/usr/local/freesurfer60$ mri_convert --help Illegal > >> instruction (core dumped) knutjb@dmed4960:/usr/local/freesurfer60$ > >> mri_convert -h Illegal instruction (core dumped) > >> knutjb@dmed4960:/usr/local/freesurfer60$ > >> > >> and in GDB > >> Starting program: /usr/local/freesurfer60/bin/mri_convert > >> [Thread debugging using libthread_db enabled] Using host libthread_db > >> library "/lib/x86_64-linux-gnu/libthread_db.so.1". > >> > >> Program received signal SIGILL, Illegal instruction. > >> 0x00000000006be48f in make_cmd_version_string (argc=argc@entry=1, > >> argv=argv@entry=0x7fffffffdd98, > >> id_string=id_string@entry=0xc6de08 "$Id: mri_convert.c,v 1.221 > >> 2015/04/16 18:56:00 greve Exp $", > >> version_string=version_string@entry=0xc6cd66 "$Name: $", > >> return_string=return_string@entry=0x7fffffffb0e0 "(\rW\366\377\177") > >> at version.c:215 > >> 215 version.c: No such file or directory. > >> > >> Knut Jørgen Bjuland > >> > >> > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom > > it is addressed. If you believe this e-mail was sent to you in error > > and the e-mail contains patient information, please contact the > > Partners Compliance HelpLine at http://www.partners.org/complianceline > > . If the e-mail was sent to you in error but does not contain patient > > information, please contact the sender and properly dispose of the e-mail. > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
