Mia, Hi, what sort of error? I looked at the image in freeview, and it looks like the patient is missing their left frontal lobe. The surfaces look ok in that region given that.
btw, to make viewing in freeview easy, add this to your .cshrc, all one line: alias fv "freeview -v mri/T1.mgz mri/brainmask.mgz mri/aseg.mgz:colormap=lut -f surf/lh.pial:edgecolor=red surf/rh.pial:edgecolor=red surf/lh.white:edgecolor=blue surf/rh.white:edgecolor=blue" then, to use: cd BW30_PreOp_MRI fv it will bring-up the major volumes and surfaces. N. On Mon, 2015-05-18 at 20:02 +0000, Borzello, Mia wrote: > Hi Freesurfers, > > > I ran recon-all and didn't initially get an error. I am not plotting > the surface in matlab and am getting an error but am not sure why. Any > help would be great! Thanks! > > > 1) BW30 > 2) recon-all -autorecon1 -autorecon2 -autorecon3 > -subjectBW30_SurferOutput -i > /autofs/space/huygens_001/users/mia/subjects/BW30_PreOp_MRI/1.3.12.2.1107.5.2.32.35311.2015032512254299614890687.0.0.0/1.3.12.2.1107.5.2.32.35311.2015032512330819010190759.dcm > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
