*Dear Freesurfer experts,
**I have encountered the following error while running the tracula
**pre-processing command and was hoping you could help me understand how
**to correct this.*

*from the log file *


*INFO: input image orientation is LPS
INFO: input image determinant is 3.51562
fslswapdim /mnt/hgfs/linux_share/subjects/TB_400/dmri/dwi_orig.nii.gz
x -y z /mnt/hgfs/linux_share/subjects/TB_400/dmri/dwi_orig_flip.nii.gz
INFO: left-right orientation was flipped by fslswapdim
fslorient -forceradiological
/mnt/hgfs/linux_share/subjects/TB_400/dmri/dwi_orig_flip.nii.gz
INFO: found /mnt/hgfs/linux_share/subjects/TB_400/dmri/dwi_orig.mghdti.bvals,
converting to FSL format
INFO: found /mnt/hgfs/linux_share/subjects/TB_400/dmri/dwi_orig.mghdti.bvecs,
converting to FSL format
mv -f /mnt/hgfs/linux_share/subjects/TB_400/dmri/dwi_orig_flip.mghdti.bvecs
/mnt/hgfs/linux_share/subjects/TB_400/dmri/bvecs
mv -f /mnt/hgfs/linux_share/subjects/TB_400/dmri/dwi_orig_flip.mghdti.bvals
/mnt/hgfs/linux_share/subjects/TB_400/dmri/bvals
mri_convert / /mnt/hgfs/linux_share/subjects/TB_400/dmri/b0mag.nii.gz
mri_convert / /mnt/hgfs/linux_share/subjects/TB_400/dmri/b0mag.nii.gz
corRead(): can't open file /COR-.info
$Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
reading from /...*

Thanks

Efrat
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Reply via email to