Use aparc.a2009s+aseg.mgz
On 05/11/2015 02:01 PM, Alshikho, Mohamad J. wrote:
> Hi Doug,
>
> I want to use the command "fcseed-config" to configure the segment 1126 (in
> aparc+aseg) as a seed to pass it to connectivity analysis. I ran the command
> line:
>
> fcseed-config -segid 1126 -fcname L_G_Precentralgyrus.dat -fsd bold -mean
> -cfg mean.L_G_Precentralgyrus.config
>
> Then I ran the command fcseed-sess -s ${i} -cfg
> mean.L_G_Precentralgyrus.config to create the FC seed for every subject.
>
>
> The final message for the previous command line was "Found 0 voxels in final
> mask"
>
> I changed the configuration file as the following : FillThresh I make it (0)
> , Domean I make it (0)... and I got the same result "Found 0 voxels in
> final mask"
>
> I tried to run mri_binarize --i aparc+aseg.mgz --o L_G_Precentralgyrus.mgz
> --match 1126 I got the same result "Found 0 voxels in final mask"
>
> When I ran the previous command line using the flag -binval 0 I got voxels
> in the final mask.
>
>
> Regarding the command fcseed-sess how can I force it to find voxels in the
> final mask?
>
> Thanks,
> Mohamad
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>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
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