I have successful runs of recon-all -autorecon1 and recon-all -autorecon2-volonly per your suggested sequence: recon-all -s subj -autorecon1 recon-all -s subj -autorecon2-volonly recon-all -s subj -autorecon2-perhemi -hemi rh -log recon-all-hemi rh.log -notify rh-done.log -openmp 4 & recon-all -s subj -autorecon2-perhemi -hemi lh -log recon-all-hemi-lh.log -notify lh-done.log -openmp 4 & while (rh-done.log AND lh-done.log do not both exist) do sleep 1 end loop recon-all -s -autorecon3
However my 2 runs of recon-all -autorecon2-perhemi are ending with no errors
but after just a few seconds.
Is this correct?
Are there other functions which should be getting executed?
???
Here is one of the 2 recon-all commands. The 2 log files are attached.
recon-all \
-s ${SubNo} \
-autorecon2-perhemi \
-hemi rh \
-log ${WD}/${SubNo}/recon-all-hemi_rh.log \
-notify ${WD}/${SubNo}/rh-done.log \
-openmp ${nCpus} \
-no-isrunning \
&
Thanks,
Don
Don Krieger, Ph.D.
Department of Neurological Surgery
University of Pittsburgh
recon-all-hemi_lh.log
Description: recon-all-hemi_lh.log
recon-all-hemi_rh.log
Description: recon-all-hemi_rh.log
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