Hi Freesurfers, I am having trouble manually correcting the surface of brain with an abnorally thick cortex due to a malformation. It seems as though there is a thickness threshold that constrains the pial surface reconstruction. I have added control points to the white matter but the problem seems to be due to the adnormally thick cortex or the abnormal gyrification. Is there an option I can change when running recon-all or a manual edit I can make in these cases? I understand that it may not be perfect but I would like to get it good as possible.
Thanks in advance, Jonathan [image: Inline image 1]
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