Hi Surfers,
I want to find a way to analyze subcortical activities in native space
and still take advantage of per-run registration. As far as I understand,
this is not possible in current preproc-sess. We need one extra step in
which we have to map all fmcpr.nii.gz files to subject's orig.mgz. I am
trying:
mri_vol2vol --mov fmcpr.nii.gz --o fmcpr.native.nii.gz --fstarg orig.mgz
--reg register.dof6.dat --no-save-reg --interp trilin
in my mind, it is equivalent of what preproc-sess does when we use
-mni305 flag (it uses mri_vol2vol to map fmcpr to mni space).
Am I right?
--
Shahin Nasr
PhD in Cognitive Neuroscience
Martinos Imaging Center, MGH
Harvard Medical School
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