Hi, I'm using FreeSurfer for analyses on lesioned brains, and so far it has worked well for most of my patient group and control group. However, for a few subjects (lesion size does not seem to be the case here) the recon-all stream crashes at the stage of talairach_afd.
Here is the exact error log: talairach done \n cp transforms/talairach.auto.xfm transforms/talairach.xfm \n #-------------------------------------------- #@# Talairach Failure Detection Tue Mar 17 10:55:51 EDT 2015 /Applications/freesurfer/subjects/016_m/mri \n talairach_afd -T 0.005 -xfm transforms/talairach.xfm \n ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string. Anything I can do aside from manual alignment on these subjects? Thanks. Best, Gabrielle -- Gabrielle-Ann Torre, PhD Student Interdisciplinary Program in Neuroscience Georgetown University *ga...@georgetown.edu <gto...@email.arizona.edu>*
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