On 03/12/2015 09:54 AM, Krieger, Donald N. wrote: > > Dear List, > > I have sets of vectors in RAS coordinates from many volunteers. > > I want to transform them into coordinates for a standard volume. > > (1) I presume the standard volume that makes sense to use is orig.mgz > in $FREESURFER_HOME/subjects/fsaverage/mri. Please confirm. > Yes > > (2)I presume that I can transform the vectors contained in subject N’s > .label files to talairaich coordinates using the transform in > $FREESURFER_HOME/subjects/subjectN/mri/transforms/talairach.xfm. > Please confirm. > Yes, though it is not easy to apply yourself. If you put the xyz into a label file, then you can use mri_label2label. Note that the xyz have to be in an FS coordinate system. See http://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems > > (3)What tool can I use to convert orig.mgz into a sequence of axial > cuts in some standard graphics format, e.g. gif, png, tiff? > I don't know of one. > > Thanks and best regards, > > Don > > Signature0001 > > Don Krieger, Ph.D. > > Department of Neurological Surgery > > Universityof Pittsburgh > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
