Hi, Bruce. I am currently putting the file (Well-C0-T1w-023-20050425_124.zip) - it will take a while. I was able to make it a lot better using the Topological Defect correction in tkmedit. Is it suitable for this task? I have not tried adding control points. This is an older data with a quite long follow-up, so unfortunately I can not change the acquisition. Sorry, I am unaware of the type of receive coil that was used. Thanks, Pedro Rosa.
On Friday, March 6, 2015 at 10:28 AM, Bruce Fischl wrote: > Hi Pedro > > the instructions are at: > > http://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange > > have you tried control points in the temporal wm? And what receive coil did > you use? You might be better off with something like 1.1mm isotropic if you > can change the acquisition > > cheers > Bruce > > On Fri, 6 Mar 2015, > Pedro Rosa wrote: > > > Sure. How can I do it? > > > > Sent from my iPhone > > > > On Mar 6, 2015, at 00:01, Bruce Fischl <fis...@nmr.mgh.harvard.edu > > (mailto:fis...@nmr.mgh.harvard.edu)> > > wrote: > > > > Can you put it on our ftp site instead? > > > > > > > > On Mar 5, 2015, at 9:37 PM, Pedro Rosa <pedrogomesr...@gmail.com > > (mailto:pedrogomesr...@gmail.com)> > > wrote: > > > > Hi, > > It will upload in an hour, Iguess: > > https://www.dropbox.com/sh/n9talmyxiafdt56/AADFttKFv3erLqDd48OpjQsna > > ?dl=0 > > Thanks a lot, > > Pedro. > > > > On Mar 5, 2015, at 23:32, Bruce Fischl > > <fis...@nmr.mgh.harvard.edu (mailto:fis...@nmr.mgh.harvard.edu)> wrote: > > > > Hmmm, if you upload it we will take a look > > Bruce > > > > > > > > On Mar 5, 2015, at 9:26 PM, Pedro Rosa - Gmail > > <pedrogomesr...@gmail.com (mailto:pedrogomesr...@gmail.com)> wrote: > > > > That’s from a 1.5T-SPGR GE scanner with > > 0.86x0.86x1.5mm voxel size, echo time 5.2ms, > > repetition time 21.7ms, angle 20, FOV 22, > > matrix size 256x192mm. > > > > Pedro Rosa > > > > On Thursday, March 5, 2015 at 11:11 PM, Bruce Fischl > > wrote: > > > > What are your acquisition parameters, > > voxel size etc...? > > > > > > > > On Mar 5, 2015, at 9:08 PM, Pedro Rosa - Gmail > > <pedrogomesr...@gmail.com (mailto:pedrogomesr...@gmail.com)> wrote: > > > > Hi, Bruce. > > Yes, it it the T1.mgz. Is it a large > > topological error? Can I correct it > > editing wm.mgz? > > Thanks, > > Pedro. > > > > On Thursday, March 5, 2015 at 10:52 PM, > > Bruce Fischl wrote: > > > > What is the background > > image? Is it the t1 that > > your reconned? Can you give > > us the details about it? > > > > > > > > On Mar 5, 2015, at 8:28 PM, Pedro > > Rosa - Gmail > > <pedrogomesr...@gmail.com (mailto:pedrogomesr...@gmail.com)> wrote: > > > > Dear FreeSurfer, > > I have found several > > subjects to have temporal > > lobe misegmentations > > (usually neocortical, as > > attached, but sometimes > > mesial tempporal), and less > > frequently in the insula. > > I could find in the manual > > editing page from the Wiki a > > way to fix this. How should > > I do it? > > Thanks a lot, > > Pedro Rosa. > > > > <TemporalLobe 2.png> > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu (mailto:Freesurfer@nmr.mgh.harvard.edu) > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu (mailto:Freesurfer@nmr.mgh.harvard.edu) > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is > > intended only for the person to > > whom it is > > addressed. If you believe this > > e-mail was sent to you in error > > and the e-mail > > contains patient information, > > please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline > > . If the e-mail was sent to you in > > error > > but does not contain patient > > information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu (mailto:Freesurfer@nmr.mgh.harvard.edu) > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu (mailto:Freesurfer@nmr.mgh.harvard.edu) > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended > > only for the person to whom it is > > addressed. If you believe this e-mail was sent > > to you in error and the e-mail > > contains patient information, please contact > > the Partners Compliance HelpLine at > > http://www.partners.org/complianceline . If > > the e-mail was sent to you in error > > but does not contain patient information, > > please contact the sender and properly > > dispose of the e-mail. > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu (mailto:Freesurfer@nmr.mgh.harvard.edu) > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu (mailto:Freesurfer@nmr.mgh.harvard.edu) > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for > > the person to whom it is > > addressed. If you believe this e-mail was sent to > > you in error and the e-mail > > contains patient information, please contact the > > Partners Compliance HelpLine at > > http://www.partners.org/complianceline . If the > > e-mail was sent to you in error > > but does not contain patient information, please > > contact the sender and properly > > dispose of the e-mail. > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu (mailto:Freesurfer@nmr.mgh.harvard.edu) > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu (mailto:Freesurfer@nmr.mgh.harvard.edu) > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person > > to whom it is > > addressed. If you believe this e-mail was sent to you in error > > and the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent > > to you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu (mailto:Freesurfer@nmr.mgh.harvard.edu) > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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