I'm having the same issue- any updates on this problem that Jason Naftulin posted?
Thanks, m ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Naftulin, Jason Scott Sent: Friday, February 27, 2015 2:50 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Expediting the pial surface calculation Hi, We are wondering if there is a faster way to generate lh.pial and rh.pial than running the 24 hour long recon-all function. We took a look at http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllFilesVsSteps and it seems that the inputs for lh.pial and rh.pial are needed from the recon-all output. We were wondering how difficult it would be to generate a custom script to significantly decrease the amount of time needed to generate these two surfaces. Is there someone we can talk to who might be interested in doing this? Also, we are wondering if there is an object in Freesurfer that handles the entire brain as one object instead of as two separate hemispheres. We would like to 3D print the entire brain at once with accurate inter-hemisphere relationship. Any and all advice you can provide would be most helpful. Thanks, Jason
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