Hi Jason I don't think so - you'll probably have to edit the recon-all script. And by template do you just mean the folding pattern .tif files, or do you meant the parcellation atlases (*.gcs)?
cheers Bruce On Thu, 5 Mar 2015, Jason Tourville wrote: > Greetings, > I have generated custom surface templates from pediatric data sets. To apply > it to the larger data set, is it sufficient to simply run the autorecon3 > steps (perhaps skipping the mris_sphere step)? If so, is there a handy flag > for running this with recon-all and/or a way to run autorecon3 with a flag > indicating that the non-default template should be used? > > Once I've done this, I'd like to do some form of comparison b/w the > templates. I am considering looking at the overlap of surface labels > generated by the custom templates to a manually labeled "gold standard." > Does that sound reasonable? Do you have any other suggestions? > > Best, > Jason > > -- > Jason A. Tourville, Ph.D. > Research Assistant Professor > Department of Speech, Language, > and Hearing Sciences > Boston University > 677 Beacon St. > Boston, MA 02215 > Phone: (617)353-9484 > Fax: (617)353-7755 > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
