Hello,
 
I am trying to make the Two Stage Longitudinal processing and when I give the command to prepare the data with QCACHE.
 
I've already set up the environment for FREESURFER_HOME, but it keeps appearing the error message: 
 
ERROR: FREESURFER_HOME not defined in environment

ERROR 1 : mri_label2label mapping the label failed?

 

 

Following, there is a copy of my command and the error messages that appeared.

 

sudo long_mris_slopes --qdec $SUBJECTS_DIR/qdec/longRRMSP01.qdec.table.dat --meas thickness --hemi lh \ --do-avg --do-rate --do-pc1 --do-spc --do-stack --do-label \ --time years --qcache $SUBJECTS_DIR/fsaverage/ --sd $SUBJECTS_DIR/

Password:

Parsing the qdec table: /analise//qdec/longRRMSP01.qdec.table.dat

 

Working in SUBJECTS_DIR: /analise//

 

 

Working on hemi: lh

 

 

Subject-Template: P01_TP

 

 

INFO: 2 TPs in P01_TP , mean age: 2.25

 

 

===============================================================================

SUBJECT P01_TP  Intersecting Within-Subject Cortex Label

 

cp /analise//P01_RM1.long.P01_TP/label/lh.cortex.label /analise//P01_TP/label/lh.long.cortex.label

 

 

 

mris_label_calc intersect /analise//P01_RM2.long.P01_TP/label/lh.cortex.label /analise//P01_TP/label/lh.long.cortex.label /analise//P01_TP/label/lh.long.cortex.label

 

 

 

 

===============================================================================

SUBJECT P01_TP  mapping label to QCache

 

mri_label2label --srclabel /analise//P01_TP/label/lh.long.cortex.label --srcsubject P01_TP --trglabel /analise//P01_TP/label/lh.long.cortex./analise//fsaverage/.label --trgsubject /analise//fsaverage/ --regmethod surface --hemi lh

 

 

srclabel = /analise//P01_TP/label/lh.long.cortex.label

srcsubject = P01_TP

trgsubject = /analise//fsaverage/

trglabel = /analise//P01_TP/label/lh.long.cortex./analise//fsaverage/.label

regmethod = surface

 

srchemi = lh

trghemi = lh

trgsurface = white

srcsurfreg = sphere.reg

trgsurfreg = sphere.reg

usehash = 1

Use ProjAbs  = 0, 0

Use ProjFrac = 0, 0

DoPaint 0

 

ERROR: FREESURFER_HOME not defined in environment

ERROR 1 : mri_label2label mapping the label failed?

 

 

Thank you, Carolina

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