I have no idea what the problem is. You can have it exclude the fsnr
maps by adding -no-anamaps, though there might be something else going
on with the data. Can you give me the location of your data and
SUBJECTS_DIR as well as the command line you ran and the full terminal
output of the command line?
doug
On 1/29/15 2:33 PM, Baran, Bengi wrote:
Hi,
We're trying to run isxconcat -sess and ran into the following error:
ERROR: cannot determine format for stem ..../raw.fsnr
Apparently our individual subject analysis files do not include a
raw.fsnr file instead we have fsnr.nii in all the contrast folders.
This error terminates isxconcat so we're unable to get the surface
based ces.nii etc files
Any idea why that may be the case or is there any flag to remove this
step?
Best,
Bengi Baran, Ph.D.
Post-Doctoral Fellow
Martinos Center for Biomedical Imaging
Harvard Medical School
Massachusetts General Hospital
149 13th Street
Charlestown Navy Yard
Charlestown, MA 02129
email: bba...@partners.org <mailto:bba...@partners.org>
phone: 617-643-7964
fax: 617-726-4078
https://sleep.med.harvard.edu/people/trainees/1598/Bengi+Baran+MA+PhD
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