Hi FS user,
I am trying to extract time series of fmri rest data of certain parcellated
regions (both cortical and subcortical). for that I am doing following
# bbregister --s <sub id> --mov <EPI.nii.gz> --init-fsl --reg register.dat
--bold# mri_label2vol --aparc+aseg --subject <sub id> --temp <EPI.nii.gz>
--fillthresh 0.5 --reg regsiter.dat --o test1.nii.gz
# mri_vol2vol --mov test1.nii.gz --targ <sub id/mri/aparc+aseg.mgz> --reg
register.dat --o test2.nii.gz# mri_segstats --seg <sub id/mri/aparc+aseg.mgz>
--id <e.g. 11 for L caudate> --in test2.nii.gz --avgwf <textfile.txt>
I am not able to get the mean time series values. Could anyone tell me what I
am missing?
Cheers,
Sabin Khadka
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