Ok thanks! I was using control points previously, I think that was my problem.
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu 
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Ruopeng Wang 
[rpw...@nmr.mgh.harvard.edu]
Sent: Wednesday, January 14, 2015 5:11 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Freeview question: using "line profile"

I think you need to create 2 sets of way points as iso-lines. You can do that 
from File -> New Point Set and select 'way point'. Then you should be able to 
use the line profile tool.

On 01/14/2015 04:55 PM, Albrecht, Daniel S. wrote:
Hello,

I'm having trouble using the "line profile" tool in FreeView. I have a PET 
image overlaid on an MR image, and would like to view a line profile of a 
rectangular ROI on the PET image. I assumed that the "line profile" selection 
in "Tools" would be able to do this, but I haven't been able to get it to work 
and haven't been able to find any documentation on using the tool. Can anyone 
provide any information on this? Thanks,

Dan



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