-rwxr-xr-x 1 root wheel 60776 Jan 29 2013 #trac-all# -rw-r--r--@ 1 Stefano staff 3985520 Jan 7 21:21 3dvolreg.afni
ls -l mris_register mris_register.cls: mris_register.c: No such file or directory -rwxr-xr-x 1 root wheel 7351544 May 14 2013 mris_register Thanks, Stefano ----Messaggio originale---- Da: fis...@nmr.mgh.harvard.edu Data: 7-gen-2015 23.09 A: <std...@virgilio.it>, "Freesurfer support list"<freesurfer@nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] R: Re: R: Error first step FS-FAST ls -l and see if the 'x' bit is set. For example: ls -l mris_register mris_register.c -rwxrwxr-x 1 fischl fsdev 21563282 Jan 6 17:02 mris_register -rw-rwxrw- 1 fischl fsdev 37035 Jan 6 17:02 mris_register.c mris_register.c is not and mris_register is executable cheers Bruce On Wed, 7 Jan 2015, std...@virgilio.it wrote: > How can I check whether it is executable? > Thanks, > > > Setafno > > ----Messaggio originale---- > Da: gr...@nmr.mgh.harvard.edu > Data: 7-gen-2015 22.51 > A: <freesurfer@nmr.mgh.harvard.edu> > Ogg: Re: [Freesurfer] R: Error first step FS-FAST > > And is it executable? > On 01/07/2015 04:35 PM, std...@virgilio.it wrote: > > > > Thank you very much. > > > > I have placed file 3dvolreg.afni in Applications/freesurfer/bin/ but > > the error persist. > > > > Stefano > > > > > > > > ----Messaggio originale---- > > Da: std...@virgilio.it > > Data: 7-gen-2015 11.14 > > A: <freesurfer@nmr.mgh.harvard.edu> > > Ogg: [Freesurfer] Error first step FS-FAST > > > > Hi list, > > > > I'm running FS-FAST. > > > > After this command > > > > preproc-sess -sf sessid -surface fsaverage lhrh -mni305 -fwhm 5 > > -per-run -fsd rest > > > > I obtain this error: > > > > register-sess completed > > > > Sess01 MC ----------------------------- > > > > mc-sess -fstem f -fmcstem fmcpr -s Sess01 -d > > /Applications/freesurfer/subjects/FUNCTIONAL_DATA -fsd rest -per-run > > -update > > > > Logfile is > > /Applications/freesurfer/subjects/FUNCTIONAL_DATA/log/mc-Sess01-rest.log > > > > ------------------------------------------- > > > > /Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01 > > > > RunList: 001 002 003 > > > > ------- ************************** ----------- > > > > ------- Motion Correcting Run 001 ----------- > > > > ------- ************************** ----------- > > > > sess = Sess01 > > > > Wed Jan 7 11:07:02 CET 2015 > > > > mc-afni2 --i 001/f.nii --t 001/template.nii.gz --o 001/fmcpr.nii.gz > > --mcdat 001/fmcpr.mcdat > > > > ERROR: cannot find AFNI command 3dvolreg.afni > > > > > > What is 3dvolreg.afni? Where it should be placed? > > > > > > > > Thanks in advanced > > > > > > > > Stefano > > > > > > > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
