You can get that program from here ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/5.3.0-patch/lion/3dvolreg.afni
copy it into $FREESURFER_HOME/bin doug On 01/07/2015 05:14 AM, std...@virgilio.it wrote: > Hi list, > > I'm running FS-FAST. > > After this command > > preproc-sess -sf sessid -surface fsaverage lhrh -mni305 -fwhm 5 > -per-run -fsd rest > > I obtain this error: > > register-sess completed > > Sess01 MC ----------------------------- > > mc-sess -fstem f -fmcstem fmcpr -s Sess01 -d > /Applications/freesurfer/subjects/FUNCTIONAL_DATA -fsd rest -per-run > -update > > Logfile is > /Applications/freesurfer/subjects/FUNCTIONAL_DATA/log/mc-Sess01-rest.log > > ------------------------------------------- > > /Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01 > > RunList: 001 002 003 > > ------- ************************** ----------- > > ------- Motion Correcting Run 001 ----------- > > ------- ************************** ----------- > > sess = Sess01 > > Wed Jan 7 11:07:02 CET 2015 > > mc-afni2 --i 001/f.nii --t 001/template.nii.gz --o 001/fmcpr.nii.gz > --mcdat 001/fmcpr.mcdat > > ERROR: cannot find AFNI command 3dvolreg.afni > > > What is 3dvolreg.afni? Where it should be placed? > > > > Thanks in advanced > > > > Stefano > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
