for left and right:
1. 2 and 42
2. 3 and 42
3. 10 and 49
4. 77/78/79
5. 11 and 50
6. 12 and 51
7. 13 and 52
8. We don't have a single one for all of cingulate and it depends on which
parcellation you use. You should take the uniton of e.g. 1002 and such
(assuming you are using the aparc and not the a2009)
cheers
Bruce
On Wed, 7 Jan 2015, Ben Eliezer, Noam wrote:
Dear Freesurfer Gurus —
I’m using mri_extract_label to extract segmentation masks, but a little
baffled as to which label numbers to use for each brain part.
The masks I need are:
1. Global white matter
2. Cortical Gray matter
3. Thalamus
4. WM-Hypointensity
5. Caudate nucleus
6. Putamen
7. Palidum
8. Entire cingulate gyrus
...the problem is each of these appear under many label numbers.
For example, the thalamus appears in label numbers: 9, 10, 48, 49, 107, 116,
8001-8014.
Any suggestion how to decide which label numbers to use for each of the
above brain parts?
Thanks!
— Noam
--
Noam Ben-Eliezer, PhD
Adjunct Assistant Professor of Radiology
Center for Biomedical-Imaging
New-York University Medical School
noam.ben-elie...@nyumc.org
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