Hi Ruopeng, thank you very much!
> Hi Angela, > > The issue has been fixed. It is because your annotation has 0's which is > corresponding to black color in the color table). I've made change in my > code so it doesn't display 0's. The fix will be in tomorrow's dev build. > If you are interested in trying it. You can download the dev version of > freeview tomorrow. > > Best, > Ruopeng > > On 11/30/2014 12:45 PM, angela.fav...@unipd.it wrote: >> thank you for your help >> please find attached the annot file >> I am using the 5.3 release >> >> Angela >> >>> Would it be possible to send us your annoy file? Are you using the >>> latest >>> dev version of freeview or the one with 5.3 release? >>> >>> Best, >>> Ruopeng >>> >>> On Nov 29, 2014, at 4:51 AM, angela.fav...@unipd.it wrote: >>> >>>> Hi all, >>>> I have a problem with freeview and I am not sure about the command >>>> line >>>> to >>>> be used to view a mask. >>>> I have created an annot file and I would like to have a picture of the >>>> mask in the inflated brain with curvature. However when I use the >>>> annot >>>> file with tksurfer I am able to do so, but with freeview the brain >>>> become >>>> all black (not in the mask) when the annot file is used. >>>> I have read the freeview manual, but I did not fond help in using >>>> freeview >>>> with command line. Where can I find some help? >>>> >>>> the command with tksurfer was: >>>> >>>> tksurfer fsaverage lh inflated -curv -gray -annot mymask.annot >>>> >>>> with freeview I tried this: >>>> >>>> freeview -f >>>> fsaverage/surf/lh.inflated:overlay=lh.curv:overlay_threshold=2,5 >>>> :annot=mymask.annot -viewport 3d >>>> >>>> thank you for any help! >>>> >>>> Angela >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom >>> it >>> is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you >>> in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
