Hi, I used recon-all with all and its taking a lot of time. My main concern is only to get the stripped brain. I tried with autorecon1 as well but its also taking not less than 15min and I need to deal with a huge data. Last stage of autorecon1 is skull stripping which takes the NU corrected input (as it FS works as a pipeline). Is there any way to directly get the "stripped brain" and its binary mask.
I also need to ask, which file of the output (name with extension) is the "binary brain mask" ? Best regards, Gunjan
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