Hi Amanda - You can try running bedpostx directly (not through trac-all) and see if that runs fine:
bedpostx /home/k1204763/images/PDPLUS_TRACULA/TRACULA_OUTPUT/PDPLUS006/dmri
a.y On Thu, 6 Nov 2014, Worker, Amanda wrote:
Hello, I am trying to run the second step of the TRACULA processing which is: trac-all -bedp -c /home/... I am currently using freesurfer v5.3.0 and I get the following error: WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/k1204763/images/PDPLUS_TRACULA/TRACULA_OUTPUT/PDPLUS006/dmri subjectdir is /home/k1204763/images/PDPLUS_TRACULA/TRACULA_OUTPUT/PDPLUS006/dmri Making bedpostx directory structure Queuing preprocessing stages Queuing parallel processing stage Unable to read script file because of error: error opening bedpostx: No such file or directory Queuing post processing stage Unable to run job: denied: "60" is not a valid object name (cannot start with a digit) Exiting. I have read that this may be a bedpostx FSL problem, however I am not familiar with this. Do you have any advice on how to overcome this problem? Thanks in advance, Amanda
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