Dear FreeSurfer experts, There are some image processing tools from the MINC toolkit I have been testing out on some FreeSurfer files, that all require the image to be in MINC format. I am able to convert the *.mgz files to *.mgz, but I have been unable to perform the conversion in the other direction (MNC -> MGZ), as forewarned in the mri_convert help file.
The error I get when attempting the conversion is "Not a netCDF file." (in full below) Would anyone have suggestions for a workaround to get the modified MNC file back into MGZ FreeSurfer format and in the correct orientation? Thank you for your time, Eve evl2001@jake:~/Desktop$ mri_convert -it minc head.mnc -ot mgz head.mgz mri_convert -it minc head.mnc -ot mgz head.mgz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from head.mnc... ncopen: filename "/dir/head.mnc": Not a netCDF file miopen: MINC package entry point Error opening /dir/head.mnc mincRead(): error reading volume from file /dir/head.mnc Eve LoCastro Staff Associate IDEAL, Radiology Department Weill Cornell Medical College 515 E. 71st St S118 Tel: 212-746-1289 Fax: 212-746-4189 http://ideal-cornell.com/<http://ideal-cornell.com>
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