Are these Siemens dicoms? If not, try dcmunpack doug On 11/13/2014 01:06 PM, Shady El Damaty wrote: > Hi freesurfers, > > I've been stuck on this problem for a while and couldn't find anything > online to help me out so I've come to the mailing list as my last resort. > > I am trying to unpack my functional data into fsl format using the > unpacksdcmdir command. However, I am not successful using this > command and get the error message: "no dicom files found" > > This is the command I'm entering: > > unpacksdcmdir -src $DICOMDIR -targ ~/Ultimatum/sess01 -scanonly > Ultimatum-01_Import.log > > When I list the contents of $DICOMDIR, I find that there are about 800 > or so files with enumerated names ending in *.ACQ (e.g.: 1.ACQ, > 2.ACQ... 800.ACQ). > > Does anyone have any ideas why unpacksdcmdir isn't reading these files? > > The output after running the command appears below. > > Thanks in advance for your help! > > Shady El Damaty > > unpacksdcmdir -src $DICOMDIR -targ ~/Ultimatum/sess01 -scanonly > Ultimatum-01_Import.log > > $Id: unpacksdcmdir,v 1.23 2008/12/15 21:42:16 greve Exp $ > > /glusterfs/mirror/cfmi/home/se394 > > -src > /raw/dicom/data/cfmi/MR/2014/10/21/1.3.12.2.1107.5.2.32.35052.30000014101416403831200000052.STU/1.3.12.2.1107.5.2.32.35052.2014102112462587284871374.0.0.0.SER > > -targ /exports/home/se394/Ultimatum/sess01 -scanonly > Ultimatum-01_Import.log > > Thu Nov 13 12:59:20 EST 2014 > > mri_convert -all-info > > ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: > $Name: stable5 $ TimeStamp: 2014/11/13-17:59:20-GMT BuildTimeStamp: > May 13 2013 16:24:28 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 > 21:55:16 mreuter Exp $ User: se394 Machine: > node020.cfmi.georgetown.edu <http://node020.cfmi.georgetown.edu> > Platform: Linux PlatformVersion: 3.10.0-123.9.2.el7.x86_64 > CompilerName: GCC CompilerVersion: 40400 > > node020.cfmi.georgetown.edu <http://node020.cfmi.georgetown.edu> > > Linux node020.cfmi.georgetown.edu <http://node020.cfmi.georgetown.edu> > 3.10.0-123.9.2.el7.x86_64 #1 SMP Tue Oct 28 18:05:26 UTC 2014 x86_64 > x86_64 x86_64 GNU/Linux > > Thu Nov 13 12:59:20 EST 2014 > > Log File is /exports/home/se394/Ultimatum/sess01/unpack.log > > INFO: Logfile is /exports/home/se394/Ultimatum/sess01/unpack.log > > SkipMoCo 0 > > Scanning source directory ... > > INFO: summary file is > /exports/home/se394/Ultimatum/sess01/dicomdir.sumfile > > INFO: status file is /exports/home/se394/Ultimatum/sess01/parse.status > > Scanning directory Thu Nov 13 12:59:20 EST 2014 > > mri_parse_sdcmdir --sortbyrun --d > /raw/dicom/data/cfmi/MR/2014/10/21/1.3.12.2.1107.5.2.32.35052.30000014101416403831200000052.STU/1.3.12.2.1107.5.2.32.35052.2014102112462587284871374.0.0.0.SER > > --o /exports/home/se394/Ultimatum/sess01/dicomdir.sumfile --status > /exports/home/se394/Ultimatum/sess01/parse.status > > 0 > > Done scanning Thu Nov 13 12:59:24 EST 2014 > > ------------------------------------------ > > ERROR: no dicom files found in > /raw/dicom/data/cfmi/MR/2014/10/21/1.3.12.2.1107.5.2.32.35052.30000014101416403831200000052.STU/1.3.12.2.1107.5.2.32.35052.2014102112462587284871374.0.0.0.SER > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
