Gunjan, Are you using your own version of VirtualBox, with freesurfer installed on it by you? Or the VirtualBox version of freesurfer made by us and downloaded from our website? I am confused because in your email below, freesurfer appears to be installed on the Desktop whereas the prepackaged version made by us is installed in /usr/local
-Zeke On 11/12/2014 08:54 AM, Gunjan Gautam wrote: > Hello Sir, > > License file is present in the folder but with the name LICENSE. Should > I download it again ? > > Best Regards, > Gunjan > > On Nov 12, 2014 7:01 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu > <mailto:fis...@nmr.mgh.harvard.edu>> wrote: > > Hi Gunjan > > do you have a license? If not you need to download and install it > (as noted in the error message). They are free. > > cheers > Bruce > On Wed, 12 Nov 2014, Gunjan Gautam wrote: > > > Hello Sir, > > I'm using FreeSurfer through Virtual Box. I tried the below > command for > reslicing my volume according to a reference volume but the > process gets > stuck at " reading volume". > > mri_convert A.nii.gz A.resliced.nii.gz -rl B.nii.gz > > A: Volume to be resampled / resliced > B: Reference Volume > > Error message is being shown like below: > > mri_convert a.nii a.resliced.nii -rl b.nii > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ > reading from a.nii... > > ------------------------------__------------------------------__-------------- > ERROR: Invalid FreeSurfer license key found in license file > /home/bibl04/Data_Home/__Desktop/freesurfer/license.txt > If you are outside the NMR-Martinos Center, > go to http://surfer.nmr.mgh.harvard.__edu > <http://surfer.nmr.mgh.harvard.edu> to > get a valid license file (it's free). > If you are inside the NMR-Martinos Center, > make sure to source the standard environment. > > Actually, I have two volumes, belong to the same subject. One > volume is the > ground truth which will be considered as standard for the second > volume > which is the processed one or the extracted brain. To perform a > perfect > comparison between both volumes, these must generate equal > number of slices > in order to compare the corresponding slide. But here there is > problem with > my volumes, that is while performing slicing Ground Truth volume is > generating 360 slice and processed volume is generating 181 > slides. So > comparison can't take place in this way. > > What all I need is to do the resampling or generating the 181 > slides from > the Ground Truth as well. > > > Best Regards, > Gunjan > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
