Hi Octavian If you upload the subject we will take a look Cheers Bruce
> On Nov 9, 2014, at 10:40 PM, Octavian Lie <octavian....@gmail.com> wrote: > > Dear all, > > 1. in the attached there is a gyrus that does not incorporated into surfaces, > whatever I do (wm edits/topological defects-cloning voxels from brainmask.mgz > or T1.mgz into wm.mgz, save volume then run recon-all autorecon2-wm autorecon > 3), or control points addition to wm in brainmask.mgz, then run the -cp flag. > Is there any other solution left to clone the white matter (and pial voxels) > left out? is brain.finalsurfs.manedit.mgz a solution? > > 2. Unrelated, after manual pial edits and reruning the recon-all > autorecon-pial command, the pial surface generated is mostly OK, however > where there have been heavy dura editing the surface looks granular. Is there > a workaround (along with better hands), such as smoothing the final pia a bit > more (preferably in the recon-all pipeline as to be convergent with other > segmentation results). > > I appreciate your help, > > Octavian > <rightgyrusfailure.png> > <rightgyrusfailurewm.png> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
