I'm new on FREESURFER and have tried to run recon-all refer to https://surfer.nmr.mgh.harvard.edu/fswiki/QuickInstall#Practicedata.26commands
However, I got an ERROR .. could you tell me how to run it. Last login: Mon Nov 3 23:53:19 on ttys000 -------- freesurfer-Darwin-lion-stable-pub-v5.3.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer FSFAST_HOME /Applications/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Applications/freesurfer/subjects MNI_DIR /Applications/freesurfer/mni Ngoaks-MacBook-Pro:~ ngoak$ cd /Applications/freesurfer/subjects/1 Ngoaks-MacBook-Pro:1 ngoak$ ls 1.hdr 1.img 1.txt A001.nii Ngoaks-MacBook-Pro:1 ngoak$ recon-all -all -i A001.nii -s subject001 mkdir: /Applications/freesurfer/subjects/subject001: Permission denied mkdir: /Applications/freesurfer/subjects/subject001/scripts: Permission denied mkdir: /Applications/freesurfer/subjects/subject001/scripts: Permission denied cp: /Applications/freesurfer/subjects/subject001/scripts/build-stamp.txt: No such file or directory cat: /Applications/freesurfer/subjects/subject001/scripts/build-stamp.txt: No such file or directory INFO: FreeSurfer build stamps do not match Subject Stamp: Current Stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0 INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects Actual FREESURFER_HOME /Applications/freesurfer /Applications/freesurfer/subjects/subject001: No such file or directory. Ngoaks-MacBook-Pro:1 ngoak$ Best Regards Chonnikan Jongkreangkrai ?
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