glad to hear it Bruce On Tue, 28 Oct 2014, Smith, Michael wrote:
> Hey Bruce, > > Never responded but this worked out great thanks for the help. > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl > Sent: Thursday, October 23, 2014 9:31 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] Creating an ROI mask for Cortical Thickness Analysis > > Hi Michael > > you can use mri_annotation2label to extract a specific label from the aparc > file and go from there. > > cheers > Bruce > On Thu, 23 Oct 2014, Smith, Michael wrote: > >> I guess I'm not entirely sure how to do that? Are there any tutorials on how >> to extract an ROI from the aparc.stats file? >> >> -----Original Message----- >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N >> Greve >> Sent: Wednesday, October 22, 2014 4:21 PM >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] Creating an ROI mask for Cortical Thickness >> Analysis >> >> >> Why not just get it from the ?h.aparc.stats file? >> >> On 10/22/2014 03:43 PM, Smith, Michael wrote: >>> Hello Freesurfer's >>> >>> I am trying to look at the cortical thickness for a specific ROI on >>> the cortical surface (Primary Auditory Cortex: transverse temporal >>> gyri). I found a specific tutorial >>> (https://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness >>> ) however the tutorial assumes I already have an ROI mask created. I >>> was wondering if anyone had any tips on creating an ROI for the >>> cortical surface from the parcellation/annotation files. I know you >>> can "hand-draw" ROI's in tkmedit or freeview but I would prefer >>> something less subjective that doesn't rely on my untrained eye and >>> unsteady hand! Thanks in advance. >>> >>> Best, >>> >>> Michael S. >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: >> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail contains patient information, please contact the Partners Compliance >> HelpLine at http://www.partners.org/complianceline . If the e-mail was sent >> to you in error but does not contain patient information, please contact the >> sender and properly dispose of the e-mail. >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
