Hi Mohamad
recon-all requires a T1, so use it. If the T2 is good quality you can use
it to avoid dura in a subsequent invocation of recon-all with the -T2pial
flag
cheers
Bruce
On Fri, 17 Oct 2014, Alshikho, Mohamad J. wrote:
Hi FS Experts,
The T1 and T2 images in my data set are as the attached images. Kindly do
you recommend that I do segmentation for the white matter using recon-all on
my T1 or T2 images or to the output of a registration process between T1 and
T2
I highly appreciate any recommendation
Looking forward to learn from you and thank you
Mohamad
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