Dear mailing list,
I am trying to do a recon-all with two nifti inputs: A T1 and a Flair, for pial
surface refinement. This results in an error message saying the dimensions are
mismatched. (The third dimension of the T1 and Flair are different by one
slice. ) I do not, however, have a problem running recon-all with only one T1
input. I am using Freesurfer v 5.1 .
I read in the release notes that in version 5.2 you can use the flag -FLAIR
when you are using a flair image as input. I suppose this will not run in an
earlier version? Would it be correct to use the following command :
recon-all -s [subject] -i T1.nii -i flair.nii -all
Kind regards,Vilde
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