Hi Sooyun

what kind of acquisitons do you have? For just T1 we probably don't have anything. If you had a T2 or FLAIR we do have some tools, but they are not distributed/documented/tested/etc.... yet.

sorry
Bruce


On Mon, 6 Oct 2014, 조수연 wrote:


Hello, dear fellow Freesurfers.


I was wondering whether there was any way to automatically measure the longest 
or the maximum length(or
thickness or diameter) of cortical lesions.

By this I mean that if there were to say 3 distinctive lesions in the brain of 
the patient, each with 1mm,
2mm, 7mm maximum diameters, the 7mm will be chosen as the representative "maximum 
lesion thickness" of the
patient.

Considering that there are automated methods to measure the average cortical 
thickness, with a little
tweaking, it seems plausible that we can measure the lesion's maximum thickness 
automatically too.

I know there are provided methods that able us to automatically segregate 
lesion specific areas from T1
FLAIR images. Will there be a way to get the measurements that I want using 
these masks?

Using the masks isn't essential as long as I can get the maximum lesion 
thickness automatically.

I'm not so familiar with computational algorithms so please any form of advice 
will be appreciated.

Thank you for taking your time to read this. Hope all of you have a great day.


Sincerely, Sooyun Cho.


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