mri_binarize is a freesurfer command-line program and --wm is an option to that program.
On 10/03/2014 02:09 AM, Leise Borg wrote: > > Hi FreeSurfer > > I need the white matter segmentations, and I've looked at some e-mail > correspondence and one answer I think I can use is the following: > > If you just want white matter, then better to create a mask from the > > aparc+aseg.mgz with mri_binarize with the --wm flag. > > doug > > I just don't understand what it means.. I do have the aparc+asset.mgz, > but what is a mri_binarize and --wm flag? I don’t have FreeSurfer > installed on my on computer. > > All the best, > Leise. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
