Thanks very much, Douglas.
This is very helpful.
Best,
Xiang-zhen
【小孔成像】http://www.conxz.net
From: Douglas N Greve
Date: 2014-09-11 22:48
To: freesurfer
Subject: Re: [Freesurfer] from freesufer label to diffusion mask
Usually, the register.dat is generated with bbregister. What you have
may work if the DTI was acquired in the same session as the anatomical
and the subject did not move between the two.
doug
On 09/11/2014 08:16 AM, Xiang-zhen Kong wrote:
> Hi, all.
> I want to convert a freesufer label to diffusion mask with the
> following approach.
> # tkregister2 --mov S0001_FA.nii.gz --noedit --s S0001 --regheader
> --reg register.dat
> # mri_annotation2label --subject S0001 --hemi rh --outdir ./labels
> --annotation aparc.a2009s
> tkregister2 --mov S0001_FA.nii.gz --noedit --s S0001 --regheader --reg
> register.dat
> # mri_label2vol --label ./labels/rh.entorhinal.label --temp
> S0001_FA.nii.gz --subject S0001 --hemi rh --o rh.entorhinal.nii.gz
> --proj frac 0 1 .1 --fillthresh 0.3 --reg register.dat
> I wonder whether this is correct? In particular, what I am not sure
> about is the generation about the *register.mat* in the first line cmd.
> Best,
> Xiang-zhen
> ------------------------------------------------------------------------
> 【小孔成像】http://www.conxz.net
>
>
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--
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