Hi Gayane,
what happens if you run the mris_calc command directly? Also check if
all the inputs really exist. It could be that you need to update
mris_calc there was a problem with long file names in an earlier
version. Which FS version are you using?
Best, Martin
On 09/09/2014 09:51 AM, Gayane Aghakhanyan wrote:
Dear list,
I'm running longitudinal two stage model as is described in the
tutorial here: http://freesurfer.net/fswiki/LongitudinalTwoStageModel
First, I've proceeded with longitudinal pipeline all my data, second,
I've created longitudinal qdec table, and then, I've started to qcache
my data, which after few seconds ends up with error:
SUBJECT template_malfara fwhm 0 computing PC1
mris_calc -o
/home/utente/Documenti/Gayane/POCD_quantitative/freesurfer_pocd/longitudinal_2013/template_malfara/surf/lh.long.thickness-pc1.fwhm0.mgh
./tmp-template_malfara_lh_thickness_Dkx9j1/beta1.mgh div
./tmp-template_malfara_lh_thickness_Dkx9j1/tp1.mgh
Saving result to
'/home/utente/Documenti/Gayane/POCD_quantitative/freesurfer_pocd/longitudinal_2013/template_malfara/surf/lh.long.thickness-pc1.fwhm0.mgh'
(type = MGH ) [ ok ]
ERROR 1 : mris_calc compute percent change (pc1) problem?
Please, could you give me a hint how I can overcome this error?
--
Gayane Aghakhanyan, MD
PhD candidate, Institute of Life Sciences
Scuola Superiore Sant'Anna
Piazza Martiri della LibertÃ
Pisa 56127, Italy
tel: +39 327 7013870
email: g.aghakhan...@sssup.it <mailto:g.aghakhan...@sssup.it>
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--
Dr. Martin Reuter
Instructor in Neurology
Harvard Medical School
Assistant in Neuroscience
Dept. of Radiology, Massachusetts General Hospital
Dept. of Neurology, Massachusetts General Hospital
Research Affiliate
Computer Science and Artificial Intelligence Lab,
Dept. of Electrical Engineering and Computer Science,
Massachusetts Institute of Technology
A.A.Martinos Center for Biomedical Imaging
149 Thirteenth Street, Suite 2301
Charlestown, MA 02129
Phone: +1-617-724-5652
Email:
mreu...@nmr.mgh.harvard.edu
reu...@mit.edu
Web : http://reuter.mit.edu
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