Thanks very much Andreia, yes this does look like what I want. I haven't had a chance to test it yet but it does indeed appear to answer my question. Thanks to those that have offered answers, to clarify, I did indeed mean the surface area of the pial surface rather than the white/grey boundary.
Will On Wed, Sep 3, 2014 at 1:12 AM, <_andre...@sapo.pt> wrote: > Hi Will, > > I use the following commands to get surface area from the pial surface: > > > In the subject label dir: > > mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh. > *aparc.pial*.stats -b -a ../label/lh.aparc.annot -c > ../label/aparc.annot.ctab SUBJ lh pial > > mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh. > *aparc.pial*.stats -b -a ../label/rh.aparc.annot -c > ../label/aparc.annot.ctab SUBJ rh pial > > > > Then run aparcstats2table using *aparc.pial* instead of aparc (only > because I called this new parcellation aparc.pial) > > > > To get the total surface area of each hemisphere I use: > > In the subject stats dir: > > mris_anatomical_stats -l ../label/lh.cortex.label -f lh.*total_pial*.stats > -b SUBJ lh pial > > mris_anatomical_stats -l ../label/rh.cortex.label -f rh.*total_pial*.stats > -b SUBJ rh pial > > Then run aparcstats2table using *total_pial* instead of aparc (again, > only because I called this new parcellation total_pial. You may call it > whatever you'd like) > > > > Just remeber to leave the specified dirs when creating the tables. If you > dont't I think they will be created in the current dir. > > I use FS 5.0. > > Is this what you want? > > > Best, > Andreia > > > Citando will brown <willbrown1...@gmail.com>: > > Hi all, > > I messed up this question recently so just want to clarify and try again. > We want to know the cortical gray matter surface area of our subjects but > are unclear about how to get this info. > > ?.aparc.stats reports: > > Measure Cortex, WhiteSurfArea, White Surface Total Area, XXXX, mm^2 > > How about the gray matter? > > Thanks, > Will > > > > > > >
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