Hi Matthew,
yes, you can use mris_fill to fill the interior of a topologically
correct, closed surface. You'll need to run some boolean operations on
them to get the volumes you want, but it should be pretty easy I think.
cheers
Bruce
On
Tue, 2 Sep 2014, Sherwood, Matt wrote:
Freesurfer,
Sorry for the repost, but I did not get any further details:
We have scans that have recon-all completed. Following recon-all, we
completed watershed (under the MNE toolbox) to extract skull and scalp from
the T1 scans. The outputs of this algorithm are outer brain, inner skull,
outer skull and outer scalp surfaces. We are particularly interested in
these volumes for our study. Is there a way to convert these surface to
volumes representative of CSF (layer between brain/skull), skull (inner to
outer skull surface) and skin (outer skull to outer scalp)?
Matthew Sherwood
Medical Research Engineer
Wright State Research Institute
4035 Colonel Glenn Hwy.
Dayton, OH 45431
PH: 937.705.1025
FAX: 937.705.1095
EMAIL: matt.sherw...@wright.edu
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