Thanks. I see that the older ones were done on freesurfer 3.0.2. I am assuming there are not many differences between the segmentation process between 3.0.2 and 3.0.3 so I downloaded 3.0.3 because 3.0.2 is no longer available. I set freesurfer_3.0.3 as the default version and started a recon-all for one of my subjects but it gave me the following error:
#@# Skull Stripping Wed Aug 27 15:14:38 PDT 2014 /home/mdiwakar/subjects/20039/mri mri_watershed T1.mgz brainmask.auto.mgz mri_watershed: error while loading shared libraries: libstdc++-libc6.2-2.so.3: cannot open shared object file: No such file or directory Linux sequoia 2.6.18-164.el5 #1 SMP Thu Sep 3 03:28:30 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux recon-all exited with ERRORS at Wed Aug 27 15:14:38 PDT 2014 Yum gave me an rpm that is compatible with this missing library and I installed it but recon-all is still throwing the same error. Any ideas what the problem could be? Joel ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Nick Schmansky, MGH [ni...@nmr.mgh.harvard.edu] Sent: Tuesday, August 26, 2014 4:58 PM To: Freesurfer support list Subject: Re: [Freesurfer] freesurfer version vs cvs version Joel, The 'recon-all.log' file in the 'scripts' directory of the subject should have the version of freesurfer used. Also, the file 'build-stamp.txt' in that same directory will show the version used. N, On Tue, 2014-08-26 at 18:31 +0000, Joel R Pieper wrote: > Hello, > > I have 80 subjects' MRIs that were segmented in 2009 with a version of > freesurfer that included this (cvs_version $Id: mri_segstats.c,v > 1.11.2.5 2006/04/13 18:57:07 nicks Exp $) in the aseg.stats output. > The other 19 of my subjects segmented in 2013 display this > (cvs_version $Id: mri_segstats.c,v 1.33.2.5 2009/02/11 22:38:51 nicks > Exp $) in the output. I think this latest version the 19 subjects were > run on is freesurfer 4.4.0 but I'm not sure which freesurfer version > the older segmentations were run on. The volumes I am looking at are > significantly different between the subjects segmented in 2009 and > those segmented in 2013. I would like to remove any bias in my data > due to different software versions. Is there a way to know which > freesurfer version output the older cvs_version so I can download that > and resegment my 19 subjects to remove version bias? This would be > much quicker than running all 100 subjects on the newest freesurfer > version. > > Joel Pieper > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
