Hi Reza, if you look in preproc-sess you will see each of the commands that gets run. You can adapt the command lines from that doug
On 08/24/2014 07:52 PM, Reza Rajimehr wrote: > Hi, > > I want to use FreeSurfer v5.3 and its FS-FAST for the functional analysis > of monkey data. To have a better control on the parameters of the > analysis, I prefer to run the individual commands of preproc-sess > one-by-one and check the output of each stage before proceeding with the > rest of preproc-sess. Specifically I may manually edit the > functional-anatomical registration, so I want to check the registration > before moving on to the next step in preproc-sess. Also I need to skip the > human-specific aspects of the analysis (e.g. Talairaching) if there are > such things in preproc-sess. So is there a list of individual commends, in > an appropriate order, that are used in preproc-sess? > > If someone has a routine for monkey data analysis with FreeSurfer v5.3, I > would be happy to know about that as well. > > Thanks, > Reza > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
