Hi Tara, Did you try to run the recon-all with the randomness flag? If you don't add this flag, your surfaces will not change much with the new recon-all and you'll probably get the same problem again when running LGI.
Let me know if you still have trouble, Marie On Aug 22, 2014, at 7:07 PM, Tara Miskovich <misko...@uwm.edu> wrote: > Hi all, > > I am getting an error that seems common for people running LGI where it > crashes due to a topological defect. > > I have run mris_euler_number and everything looks fine. Plus, I went through > each slice and made sure the surfaces looked good. > > Any advice on any other steps I can take? I have already tried rerunning > recon-all. > > Thank you! > Tara > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
